species:   Scscl
pid:       PID1653
parent:    Ssc-milR-129
paralog:   
locus:     NW_001820827.1:616857-616927
matures:   ['CGCUCGAGGGUCAUUCGGGU', 'UUUGGGAUGCGAUCACGGGCGAA']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820827.1:616857-616927

6 out of bounds
12 alignments
2 proper strand
2 stranded perfect matches

        **********************          *******************            
AAUCCGGCUUUGGGAUGCGAUCACGGGCGAAUCGCUUCAAACGCUCGAGGGUCAUUCGGGUUGGGUUAACU
((((((((((..((((..((((.((((((............))))))..))))))))))))))))))....
-----------------------------------------CGCUCGAGGGUCAUUCGGGU---------- l=20 a=0 c
--------UUUGGGAUGCGAUCACGGGCGAA---------------------------------------- l=23 a=0 c*
----------UGGGAUGCGAUCACGGGCGA----------------------------------------- l=20 a=1 ma
------------------------------------------GCUCGAGGGUCAUUCGG------------ l=17 a=0 ma*

----------UGGGAUGCGAUCACGGGCGA----------------------------------------- l=20 a=1 (ma)
---------------UGCGAUCACGGGCGAAUCGCU----------------------------------- l=21 a=1 

mb-01011
ax-1011011
ku-01
ss-110111011100
fn-101
